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viz-interaction-map

station__observatory__viz-interaction-map external (needs EXECUTION_BACKEND_URL) observatory non-pv Constructa Configa

interaction details.

Taxonomy

Linnaean classification joined from the algovigilance taxonomy index via the parent config's rank.

Rank	Value
domain	`Substrata`
kingdom	`Constructa`
phylum	`Configa`
class	`station-config`
order	`observatory`
family	`mcp-tool-config`

Characteristics:

substrate: config
domain: pv
lifecycle: continuous
authority: read
compounding: producer
io: agent-request → tool-response

Input schema

cation_pi_distance number — Maximum cation–ring distance for cation-pi (default 6.0 Å).
halogen_bond_distance number — Maximum halogen–acceptor distance (default 3.5 Å).
hbond_angle_min number — Minimum D-H···A angle for H-bonds in degrees (default 120°).
hbond_distance number — Maximum donor–acceptor distance for H-bonds (default 3.5 Å).
hydrophobic_distance number — Maximum distance for hydrophobic contacts (default 4.5 Å).
metal_coord_distance number — Maximum metal–ligand distance (default 2.8 Å).
molecule_json stringrequired — JSON-serialized `nexcore_viz::molecular::Molecule`.
pi_stack_angle_max number — Maximum inter-plane angle for pi-stacking in degrees (default 30°).
pi_stack_distance number — Maximum ring-centre distance for pi-stacking (default 5.5 Å).
salt_bridge_distance number — Maximum distance for salt bridges (default 4.0 Å).

Example call

POST /api/mcp
Content-Type: application/json

{
  "jsonrpc": "2.0",
  "id": 1,
  "method": "tools/call",
  "params": {
    "name": "station__observatory__viz-interaction-map",
    "arguments": {
      "molecule_json": ""
    }
  }
}

How to invoke from a client

From any MCP-aware client, add https://algovigilance.com/api/mcp as an MCP server, then call this tool by name. From a raw HTTP client, send the JSON-RPC body above to /api/mcp.

Agent-friendly formats

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All tools (3062 live)
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/tools/observatory__viz-interaction-map/raw.md — this page's Markdown twin