{"mcpName":"station__algovigilance__microgram-dna-align-sequences","slug":"algovigilance__microgram-dna-align-sequences","label":"Microgram: dna-align-sequences","description":"Align two DNA sequences using Smith-Waterman (local) or Needleman-Wunsch (global) algorithm. Returns alignment score, aligned sequences with gaps, and percent identity.","domainSlug":"algovigilance","pvRelevance":"pv-core","backend":"native","agentMetadata":{"idempotent":true,"read_only":true,"expected_latency_ms":null,"cost_tokens_estimate":null,"pipes_to":null},"inputSchema":{"type":"object","properties":{"query":{"type":"string","description":"Query DNA sequence (e.g., 'ATGCGATCGA')"},"target":{"type":"string","description":"Target DNA sequence to align against"},"method":{"type":"string","description":"Alignment method: 'local' (Smith-Waterman) or 'global' (Needleman-Wunsch). Default: 'local'."},"match_score":{"type":"number","description":"Score for matching bases (default: 2)"},"mismatch_score":{"type":"number","description":"Score for mismatched bases (default: -1)"},"gap_penalty":{"type":"number","description":"Gap penalty (default: -2)"}},"required":["query","target"],"additionalProperties":false},"example":null,"taxonomy":{"rank":{"domain":"Substrata","kingdom":"Constructa","phylum":"Configa","class":"station-config","order":"algovigilance","family":"mcp-tool-config"},"characteristics":{"substrate":"config","domain":"pv","lifecycle":"continuous","stateful":false,"persistence":"none","authority":"read","compounding":"producer","io_input":"agent-request","io_output":"tool-response"}},"_links":{"html":"/tools/algovigilance__microgram-dna-align-sequences","markdown":"/tools/algovigilance__microgram-dna-align-sequences/raw.md","invoke":"/api/mcp","catalog":"/api/mcp"}}